STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE03636.1Hypothetical protein. (127 aa)    
Predicted Functional Partners:
SDD56382.1
methylmalonyl-CoA mutase.
    
 0.783
SDC94124.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 
 0.616
SDC34521.1
ferredoxin-NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific).
  
 
 0.611
SDD91165.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 
 0.600
SDD33697.1
NADPH-dependent glutamate synthase beta chain.
  
 
 0.580
SDD33725.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.546
SDE03665.1
Transcriptional regulator, AraC family.
       0.546
SDC80302.1
Glyoxylase, beta-lactamase superfamily II.
   
 
 0.535
SDE41001.1
Amino acid adenylation domain-containing protein.
 
 0.516
SDC78281.1
Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
   
 
  0.512
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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