STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE10426.1Transcriptional regulator, AraC family. (345 aa)    
Predicted Functional Partners:
SDE10509.1
Ethanolamine ammonia-lyase light chain; Belongs to the EutC family.
 
   
 0.770
SDE10481.1
Ethanolamine ammonia-lyase heavy chain.
 
   
 0.766
SDD03265.1
Glutamate synthase (NADH) large subunit.
    
  0.728
SDE10454.1
Ethanolamine:proton symporter, EAT family.
 
   
 0.652
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.567
SDE34640.1
Signal transduction histidine kinase.
     
 0.564
SDE10536.1
Haloacid dehalogenase-like hydrolase.
 
     0.551
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.532
SDE10403.1
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA.
       0.526
SDD33725.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.491
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.