STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE11218.1Uncharacterized conserved protein. (146 aa)    
Predicted Functional Partners:
SDE11366.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.855
SDD29982.1
PhnB protein.
 
    0.804
SDE12564.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.782
SDC12369.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.776
SDE11180.1
Uncharacterized conserved protein.
 
    
0.676
SDE11257.1
Uncharacterized conserved protein.
 
    
0.676
SDD53948.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
    0.486
SDE11293.1
SET domain-containing protein.
       0.484
SDE11329.1
Uncharacterized conserved protein.
 
    
0.429
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
       0.418
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.