STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE12822.1ATP-binding cassette, subfamily C, CydD. (560 aa)    
Predicted Functional Partners:
SDE12789.1
ATP-binding cassette, subfamily C, CydC.
 
 
0.999
SDE12727.1
Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein.
 
  
 0.988
SDE12760.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein.
 
  
 0.988
SDE12699.1
Cyd operon protein YbgT.
 
  
 0.926
SDD52488.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein.
 
  
 0.923
SDD52451.1
Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein.
 
  
 0.917
SDE08854.1
ATP-binding cassette, subfamily B, multidrug efflux pump.
 
 
 
0.553
SDE12852.1
Glycosyltransferase involved in cell wall bisynthesis.
       0.549
SDC11143.1
ATP-binding cassette, subfamily B.
  
 
 
0.526
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
 
0.526
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.