STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE25245.1Transcriptional regulator, IclR family. (260 aa)    
Predicted Functional Partners:
SDC49315.1
Transcriptional regulator, IclR family.
  
     0.773
SDC74101.1
Transcriptional regulator, IclR family.
  
     0.767
SDE36782.1
Transcriptional regulator, IclR family.
  
     0.744
SDC23723.1
Transcriptional regulator, IclR family.
  
     0.719
SDE51874.1
Transcriptional regulator, IclR family.
  
     0.706
SDE88454.1
Transcriptional regulator, IclR family.
  
     0.697
SDE25224.1
Hypothetical protein.
       0.639
SDE25355.1
TRAP transporter, DctM subunit.
    
  0.533
SDE25273.1
Tripartite ATP-independent transporter solute receptor, DctP family.
       0.528
aroQ-2
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
     
 0.522
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.