STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE27810.1Quinol monooxygenase YgiN. (103 aa)    
Predicted Functional Partners:
SDE27841.1
Transcriptional regulator, AraC family.
 
     0.762
SDE86390.1
Fructose-bisphosphate aldolase class Ia, DhnA family.
  
 
 0.733
xylB
Xylulokinase.
  
 
 0.526
SDE86194.1
L-xylulokinase; Belongs to the FGGY kinase family.
  
 
 0.526
SDD21363.1
Hypothetical protein.
  
     0.460
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
    0.452
SDD87624.1
Thioredoxin reductase (NADPH).
  
    0.451
thrS
threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.438
SDC48529.1
Ferredoxin, 2Fe-2S.
  
  
  0.414
SDD62575.1
Conserved hypothetical protein.
  
     0.410
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.