STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE27942.1Threonine/homoserine efflux transporter RhtA. (308 aa)    
Predicted Functional Partners:
SDD77102.1
Protein of unknown function.
  
     0.600
SDE27907.1
Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family.
       0.576
SDD40931.1
Hypothetical protein.
  
     0.535
SDD46727.1
Protein of unknown function.
  
     0.501
SDD83275.1
ZipA, C-terminal FtsZ-binding domain; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family.
  
     0.487
SDE27970.1
SWIB/MDM2 domain-containing protein.
       0.482
SDC81484.1
Permease of the drug/metabolite transporter (DMT) superfamily.
  
     0.479
SDD06619.1
Hypothetical protein.
  
    0.452
SDD29507.1
Xaa-Pro aminopeptidase; Belongs to the peptidase M24B family.
    
  0.413
SDC64147.1
Hypothetical protein.
  
     0.408
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.