STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE37336.1Hemolysin activation/secretion protein. (531 aa)    
Predicted Functional Partners:
SDE37368.1
Filamentous hemagglutinin family N-terminal domain-containing protein.
 
   
 0.938
SDE51207.1
Filamentous hemagglutinin family N-terminal domain-containing protein.
 
 0.808
SDC97466.1
Filamentous hemagglutinin family N-terminal domain-containing protein.
 
 0.789
SDE37402.1
Hypothetical protein.
       0.707
SDE64867.1
Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain.
  
     0.634
SDD10163.1
Methyltransferase domain-containing protein.
  
     0.566
SDC30053.1
Hypothetical protein.
  
     0.530
SDD75203.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.522
SDD20884.1
Extended Signal Peptide of Type V secretion system.
 
 0.521
SDC52165.1
Haemagluttinin repeat-containing protein.
 
 0.516
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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