STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE41710.1Hypothetical protein. (408 aa)    
Predicted Functional Partners:
SDE41658.1
Hypothetical protein.
 
     0.924
SDE41628.1
Hypothetical protein.
 
    0.909
SDE41688.1
Dyp-type peroxidase family.
 
     0.861
SDD61014.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
 
 0.798
SDE38216.1
VCBS repeat-containing protein.
  
 0.795
SDC03471.1
Outer membrane protein.
  
 
 0.683
SDD45685.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.669
SDC03885.1
Superoxide dismutase, Cu-Zn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
    
 0.663
SDE38325.1
HlyD family secretion protein.
  
 
 0.661
SDD02300.1
Iron complex outermembrane recepter protein.
   
 
 0.653
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.