STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE48537.1Hypothetical protein. (117 aa)    
Predicted Functional Partners:
SDC73094.1
Elongation factor Tu GTP binding domain-containing protein.
   
   0.635
SDC88661.1
Elongation factor Tu C-terminal domain-containing protein.
   
   0.635
SDE67471.1
Elongation factor Tu GTP binding domain-containing protein.
   
   0.635
SDE77039.1
Elongation factor Tu C-terminal domain-containing protein.
   
   0.635
SDF01357.1
Translation elongation factor 1A (EF-1A/EF-Tu).
   
   0.635
SDE48568.1
Site-specific recombinase XerD.
    
  0.632
hemF
Coproporphyrinogen oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
   
  
 0.517
SDE01984.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
  
  
  0.501
SDC09302.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
   
  
 0.484
SDC34110.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
   
  
 0.484
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.