STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE54374.1Serine protease Do. (464 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.857
SDE94903.1
TPR repeat-containing protein.
  
 0.828
SDD72593.1
Serine protease, S1-C subfamily, contains C-terminal PDZ domain.
  
  
 
0.820
SDD04318.1
Serine pepetdase DegS.
  
  
 
0.818
SDD85102.1
Serine protease Do; Belongs to the peptidase S1C family.
  
  
 
0.805
SDE17350.1
Trypsin-like peptidase domain-containing protein.
  
  
 
0.790
SDE54402.1
Nucleotide-binding universal stress protein, UspA family.
  
    0.780
SDD19434.1
sigma-E factor negative regulatory protein RseA.
  
 
 0.771
SDD61014.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.735
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 
  0.704
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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