STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE52707.1Hypothetical protein. (157 aa)    
Predicted Functional Partners:
SDE94903.1
TPR repeat-containing protein.
   
 0.983
atpD
ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 0.973
SDE52476.1
NAD-dependent deacetylase.
    
 0.879
SDE42915.1
Hypothetical protein.
  
 
 0.817
SDD38575.1
Ankyrin repeat-containing protein.
  
 
 0.816
SDE51102.1
Ankyrin repeat-containing protein.
  
 
 0.816
SDD20994.1
Hypothetical protein.
    
 0.811
SDC16152.1
Acetoin utilization deacetylase AcuC.
 
 0.810
SDB99041.1
Protein of unknown function.
   
 0.805
SDC45045.1
Helicase conserved C-terminal domain-containing protein.
   
 0.805
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.