STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE68772.1Transcriptional regulator, ArsR family. (217 aa)    
Predicted Functional Partners:
SDE41001.1
Amino acid adenylation domain-containing protein.
  
 0.949
SDE68835.1
Sugar phosphate permease.
 
  
 0.920
SDC52359.1
Acyl carrier protein.
  
 
 0.912
SDD30130.1
Amino acid adenylation domain-containing protein.
  
 
 0.891
SDE68803.1
Glyoxylase, beta-lactamase superfamily II.
 
 0.885
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
   0.782
SDD61014.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 
  0.758
SDD08838.1
Cystathionine beta-synthase.
  
 
 0.745
SDE34525.1
Response regulator receiver domain-containing protein.
    
 0.744
SDE37088.1
Superoxide dismutase, Fe-Mn family.
  
 
 0.742
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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