STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE75108.1SlyX protein. (85 aa)    
Predicted Functional Partners:
SDE75135.1
tRNA(Arg) A34 adenosine deaminase TadA.
       0.773
SDE75038.1
Predicted arabinose efflux permease, MFS family.
       0.737
ureD
Urease accessory protein; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
       0.737
SDE75089.1
Predicted kinase.
       0.737
SDC34837.1
Uncharacterized membrane protein.
  
     0.607
SDE02732.1
Squalene-associated FAD-dependent desaturase.
  
     0.569
SDE47519.1
Cytochrome oxidase maturation protein, cbb3-type.
  
     0.547
SDD06152.1
Diadenosine tetraphosphate (Ap4A) hydrolase.
  
    0.545
SDD06287.1
Ubiquinone biosynthesis protein UbiJ.
  
     0.545
SDE53636.1
Hemerythrin-like domain-containing protein.
  
     0.526
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.