STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE80139.1Predicted metal-dependent hydrolase, TIM-barrel fold. (400 aa)    
Predicted Functional Partners:
SDC35568.1
L-fuconolactonase.
 
  
  0.862
SDC35604.1
D-threo-aldose 1-dehydrogenase.
 
 
  0.820
SDC34521.1
ferredoxin-NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific).
    
  0.779
SDE80037.1
Alcohol dehydrogenase, class IV.
    
  0.580
SDE80114.1
Acyl dehydratase.
 
     0.569
SDD91165.1
CDP-4-dehydro-6-deoxyglucose reductase.
    
  0.551
SDC30473.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
     
 0.523
SDE66490.1
Vanillate O-demethylase ferredoxin subunit.
     
 0.523
SDE80011.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
    
  0.523
SDC82411.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.488
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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