STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE82536.13-hydroxyisobutyrate dehydrogenase. (296 aa)    
Predicted Functional Partners:
SDE82551.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
  
 0.908
SDE82596.1
Hydroxypyruvate isomerase; Belongs to the hyi family.
 
 0.890
SDE82574.1
Ribulose-5-phosphate 4-epimerase/Fuculose-1-phosphate aldolase.
 
  
 0.869
SDE75699.1
Tartronate-semialdehyde synthase; Belongs to the TPP enzyme family.
 
 
 0.817
SDE09650.1
Enoyl-CoA hydratase/carnithine racemase.
 
 
 
  0.769
SDE82510.1
D-galactonate transporter.
       0.759
SDE09702.1
Malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase.
 
 
  0.718
SDD55076.1
Methylmalonate-semialdehyde dehydrogenase [acylating].
 
 
  0.706
SDC27727.1
Hydroxypyruvate reductase.
    
 0.665
SDD56276.1
propionyl-CoA carboxylase alpha chain.
  
 
  0.660
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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