STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE81869.1Putative oxidoreductase. (148 aa)    
Predicted Functional Partners:
SDE51609.1
Rhodanese-related sulfurtransferase.
 
 
  0.601
SDD08257.1
Rhodanese-related sulfurtransferase.
  
 
  0.549
SDD44918.1
Putative DNA-binding domain-containing protein.
  
  
 0.533
SDD44878.1
Hypothetical protein; Belongs to the UPF0276 family.
  
  
 0.525
SDE81846.1
Hypothetical protein.
       0.516
purH
IMP cyclohydrolase.
    
  0.483
SDD29732.1
Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
  0.473
SDE68772.1
Transcriptional regulator, ArsR family.
    
  0.464
SDE81821.1
Hypothetical protein.
       0.453
SDE28666.1
Hypothetical protein.
  
     0.440
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.