STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE89250.1Amino acid synthesis. (192 aa)    
Predicted Functional Partners:
SDC77231.1
6-hydroxynicotinate reductase.
 
     0.791
SDC77192.1
Hypothetical protein.
 
     0.790
SDC77351.1
Enamidase.
 
     0.783
SDE89275.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
       0.773
SDE89225.1
NADPH2:quinone reductase.
       0.752
SDC77082.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
     0.598
SDC77067.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family /amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.597
SDE89306.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
       0.578
SDE89334.1
Catechol 2,3-dioxygenase.
 
     0.545
SDE89361.1
Transcriptional regulator, GntR family.
       0.464
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.