Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDC45499.1 | SDC46048.1 | SAMN05444679_103111 | SAMN05444679_103126 | DNA repair exonuclease SbcCD nuclease subunit. | Hypothetical protein. | 0.824 |
SDC45499.1 | SDC59053.1 | SAMN05444679_103111 | SAMN05444679_10445 | DNA repair exonuclease SbcCD nuclease subunit. | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | 0.827 |
SDC45499.1 | SDC78187.1 | SAMN05444679_103111 | SAMN05444679_105147 | DNA repair exonuclease SbcCD nuclease subunit. | ATP-dependent DNA helicase RecQ. | 0.995 |
SDC45499.1 | SDD18972.1 | SAMN05444679_103111 | SAMN05444679_108160 | DNA repair exonuclease SbcCD nuclease subunit. | Hypothetical protein. | 0.849 |
SDC45499.1 | SDD60915.1 | SAMN05444679_103111 | SAMN05444679_11216 | DNA repair exonuclease SbcCD nuclease subunit. | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | 0.827 |
SDC45499.1 | SDD72755.1 | SAMN05444679_103111 | SAMN05444679_11336 | DNA repair exonuclease SbcCD nuclease subunit. | DNA topoisomerase-3. | 0.901 |
SDC45499.1 | SDE42836.1 | SAMN05444679_103111 | SAMN05444679_12273 | DNA repair exonuclease SbcCD nuclease subunit. | DNA polymerase-3 subunit delta'. | 0.914 |
SDC45499.1 | SDE92923.1 | SAMN05444679_103111 | SAMN05444679_1404 | DNA repair exonuclease SbcCD nuclease subunit. | RecF/RecN/SMC N terminal domain-containing protein. | 0.998 |
SDC45499.1 | polA | SAMN05444679_103111 | SAMN05444679_10876 | DNA repair exonuclease SbcCD nuclease subunit. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.997 |
SDC45499.1 | recA | SAMN05444679_103111 | SAMN05444679_11343 | DNA repair exonuclease SbcCD nuclease subunit. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.968 |
SDC46048.1 | SDC45499.1 | SAMN05444679_103126 | SAMN05444679_103111 | Hypothetical protein. | DNA repair exonuclease SbcCD nuclease subunit. | 0.824 |
SDC46048.1 | SDC78187.1 | SAMN05444679_103126 | SAMN05444679_105147 | Hypothetical protein. | ATP-dependent DNA helicase RecQ. | 0.443 |
SDC46048.1 | SDE92923.1 | SAMN05444679_103126 | SAMN05444679_1404 | Hypothetical protein. | RecF/RecN/SMC N terminal domain-containing protein. | 0.831 |
SDC46048.1 | polA | SAMN05444679_103126 | SAMN05444679_10876 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.630 |
SDC46048.1 | recA | SAMN05444679_103126 | SAMN05444679_11343 | Hypothetical protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.961 |
SDC59053.1 | SDC45499.1 | SAMN05444679_10445 | SAMN05444679_103111 | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | DNA repair exonuclease SbcCD nuclease subunit. | 0.827 |
SDC59053.1 | SDD60915.1 | SAMN05444679_10445 | SAMN05444679_11216 | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | 0.807 |
SDC59053.1 | SDE42836.1 | SAMN05444679_10445 | SAMN05444679_12273 | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | DNA polymerase-3 subunit delta'. | 0.874 |
SDC59053.1 | SDE92923.1 | SAMN05444679_10445 | SAMN05444679_1404 | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | RecF/RecN/SMC N terminal domain-containing protein. | 0.833 |
SDC59053.1 | polA | SAMN05444679_10445 | SAMN05444679_10876 | ATP-dependent DNA ligase LigD phosphoesterase module /ATP-dependent DNA ligase LigD polymerase module. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.984 |
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