STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE95887.1Hypothetical protein. (330 aa)    
Predicted Functional Partners:
SDE95915.1
Hypothetical protein.
 
     0.952
SDE95948.1
Hypothetical protein.
       0.773
SDC03053.1
Hypothetical protein.
  
     0.685
SDE46202.1
Nitroreductase family protein.
 
 
  0.677
SDE16272.1
Transcriptional regulator, LuxR family.
  
     0.629
SDC26073.1
Phosphotransferase enzyme family protein.
  
     0.565
SDE89479.1
Protein of unknown function.
  
     0.558
SDC93732.1
Putative glycosyltransferase, TIGR04348 family.
  
     0.511
SDC36502.1
Osmoprotectant transport system permease protein.
  
  
 0.498
SDD84422.1
Sulfate adenylyltransferase subunit 1.
     
 0.494
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.