STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA95510.1Two component transcriptional regulator, LuxR family. (214 aa)    
Predicted Functional Partners:
SEB04859.1
Signal transduction histidine kinase.
   
 0.941
SEA98374.1
PAS domain S-box-containing protein.
   
 0.930
SEB26248.1
PAS domain S-box-containing protein.
   
 0.930
SEB26434.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 0.907
SEA90178.1
GAF domain-containing protein.
 
 
 0.902
SEB25723.1
GAF domain-containing protein.
 
 
 0.902
SEB09977.1
PAS domain S-box-containing protein.
 
 0.901
SEB26047.1
PAS domain S-box-containing protein.
 
 0.893
SEB25722.1
Hpt domain-containing protein.
   
 0.889
SEA15099.1
PAS domain S-box-containing protein.
   
 0.887
Your Current Organism:
Variovorax sp. YR216
NCBI taxonomy Id: 1882828
Other names: V. sp. YR216
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