STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB03890.1Ferredoxin, 2Fe-2S. (107 aa)    
Predicted Functional Partners:
SEA52594.1
FeS assembly scaffold apoprotein IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
 
 0.984
iscS
Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
 
 0.982
SEB16015.1
NADPH-dependent glutamate synthase beta chain.
  
 0.981
SEA72994.1
Cytochrome P450.
  
 0.964
SEA91489.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
  
 
 0.954
SEB03900.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
 
 
 0.916
hscB
Molecular chaperone HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family.
 
  
 0.909
SEA52614.1
Iron-binding apoprotein IscA; Belongs to the HesB/IscA family.
 
 
 0.906
SEB03879.1
L-glutamine synthetase.
  
 
 0.853
SEA93893.1
Glutamate synthase (NADH) small subunit.
    
 0.837
Your Current Organism:
Variovorax sp. YR216
NCBI taxonomy Id: 1882828
Other names: V. sp. YR216
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.