STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB12766.1Transcriptional regulator, LytTR family. (248 aa)    
Predicted Functional Partners:
SEB08530.1
Sensor histidine kinase YesM.
 
 0.844
SEA33674.1
Two-component system, LytT family, sensor histidine kinase AlgZ.
 
 0.814
SEA19699.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.791
SEA19637.1
2TM domain-containing protein.
 
 0.756
SEB04859.1
Signal transduction histidine kinase.
    
 0.749
SEB21361.1
Signal transduction histidine kinase.
 
  
 0.699
SEB08540.1
Histidine kinase.
 
 
 0.694
SEB12735.1
Hypothetical protein.
 
     0.665
SEB12716.1
Uncharacterized conserved protein, contains von Willebrand factor type A (vWA) domain.
 
     0.645
SEB12697.1
Molybdenum cofactor cytidylyltransferase.
 
     0.591
Your Current Organism:
Variovorax sp. YR216
NCBI taxonomy Id: 1882828
Other names: V. sp. YR216
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