STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB19945.1Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (303 aa)    
Predicted Functional Partners:
SEB19938.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
       0.550
SEB19934.1
Phenylpropionate dioxygenase, large terminal subunit.
       0.530
SEB19929.1
CBS domain-containing protein.
  
    0.460
SEB19924.1
DNA polymerase-3 subunit epsilon.
       0.454
SEB13855.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.409
Your Current Organism:
Variovorax sp. YR216
NCBI taxonomy Id: 1882828
Other names: V. sp. YR216
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.