STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR95202.1alpha-L-rhamnosidase. (918 aa)    
Predicted Functional Partners:
SDS36122.1
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   0.755
SDT15378.1
alpha-N-arabinofuranosidase.
  
     0.720
SDS46537.1
alpha-L-fucosidase.
  
     0.709
SDS36049.1
Rhamnulokinase.
  
    0.706
SDS91963.1
alpha-L-fucosidase.
  
     0.703
SDT53318.1
Concanavalin A-like lectin/glucanases superfamily protein.
  
     0.640
SDS22765.1
Unsaturated rhamnogalacturonyl hydrolase.
 
  
  0.626
SDS91884.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
 
 
    0.607
SDR95245.1
AraC family transcriptional regulator, L-rhamnose operon transcriptional activator RhaR.
       0.568
SDS17921.1
Glycosyl hydrolase family 65, N-terminal domain.
  
     0.566
Your Current Organism:
Paenibacillaceae bacterium GAS479
NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479
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