STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS19745.1Prepilin peptidase CpaA. (164 aa)    
Predicted Functional Partners:
SDS20042.1
Tight adherence protein B.
 
  
 0.949
SDS19989.1
Type II secretion system protein F (GspF).
 
  
 0.948
SDS20092.1
Pilus assembly protein CpaF.
 
   
 0.909
SDS19707.1
FHA domain-containing protein.
 
     0.892
SDS20133.1
Cellulose biosynthesis protein BcsQ.
 
     0.848
SDS19883.1
Hypothetical protein; Manually curated.
  
  
 0.797
SDS25310.1
Pilus assembly protein CpaF.
 
   
 0.768
SDS25402.1
Chaperone for flagella basal body P-ring formation.
  
  
 0.752
SDT51512.1
Hypothetical protein.
  
  
 0.752
SDS19793.1
Hypothetical protein.
       0.724
Your Current Organism:
Paenibacillaceae bacterium GAS479
NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.