STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT12035.1Uncharacterized SPBc2 prophage-derived protein YoqJ; Belongs to the UPF0398 family. (187 aa)    
Predicted Functional Partners:
SDT16541.1
SprT-like protein; Belongs to the SprT family.
  
     0.691
SDS11565.1
ABC-2 type transport system permease protein.
  
     0.687
SDT11994.1
DNA recombination protein RmuC.
       0.661
SDT11924.1
Uncharacterized protein YneR.
       0.553
SDT11972.1
N-acetylmuramoyl-L-alanine amidase.
       0.553
SDT13920.1
General stress protein 26.
  
     0.537
SDS12143.1
Hypothetical protein.
  
     0.520
SDT15997.1
Uncharacterized protein YfkK, UPF0435 family.
  
     0.519
SDT13379.1
Uncharacterized integral membrane protein.
  
     0.517
SDS26308.1
Heat induced stress protein YflT.
  
     0.504
Your Current Organism:
Paenibacillaceae bacterium GAS479
NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.