SDT16183.1 protein (Paenibacillaceae bacterium GAS479)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDT16183.1

HD domain-containing protein. (360 aa)

Predicted Functional Partners:

SDT16159.1

0.870

SDT56411.1

0.817

SDT22504.1

0.779

SDT48091.1

0.771

SDS59435.1

0.763

SDS90683.1

0.761

SDR95695.1

0.747

SDT18689.1

0.702

SDS99749.1

0.681

SDT52930.1

0.677

Your Current Organism:

Paenibacillaceae bacterium GAS479

NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDR95695.1	SDS59435.1	SAMN05444162_0422	SAMN05444162_1820	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.516
SDR95695.1	SDS90683.1	SAMN05444162_0422	SAMN05444162_2572	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.589
SDR95695.1	SDS99749.1	SAMN05444162_0422	SAMN05444162_2803	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.470
SDR95695.1	SDT16159.1	SAMN05444162_0422	SAMN05444162_3277	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.864
SDR95695.1	SDT16183.1	SAMN05444162_0422	SAMN05444162_3278	Diguanylate cyclase (GGDEF) domain-containing protein.	HD domain-containing protein.	0.747
SDR95695.1	SDT18689.1	SAMN05444162_0422	SAMN05444162_3354	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.471
SDR95695.1	SDT22504.1	SAMN05444162_0422	SAMN05444162_3470	Diguanylate cyclase (GGDEF) domain-containing protein.	Two-component system, cell cycle response regulator.	0.478
SDR95695.1	SDT48091.1	SAMN05444162_0422	SAMN05444162_4498	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.518
SDR95695.1	SDT52930.1	SAMN05444162_0422	SAMN05444162_4792	Diguanylate cyclase (GGDEF) domain-containing protein.	GAF sensor hybrid histidine kinase.	0.996
SDR95695.1	SDT56411.1	SAMN05444162_0422	SAMN05444162_5000	Diguanylate cyclase (GGDEF) domain-containing protein.	Predicted ATPase.	0.972
SDS59435.1	SDR95695.1	SAMN05444162_1820	SAMN05444162_0422	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.516
SDS59435.1	SDS99749.1	SAMN05444162_1820	SAMN05444162_2803	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.605
SDS59435.1	SDT16183.1	SAMN05444162_1820	SAMN05444162_3278	Diguanylate cyclase (GGDEF) domain-containing protein.	HD domain-containing protein.	0.763
SDS59435.1	SDT18689.1	SAMN05444162_1820	SAMN05444162_3354	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.606
SDS59435.1	SDT52930.1	SAMN05444162_1820	SAMN05444162_4792	Diguanylate cyclase (GGDEF) domain-containing protein.	GAF sensor hybrid histidine kinase.	0.954
SDS59435.1	SDT56411.1	SAMN05444162_1820	SAMN05444162_5000	Diguanylate cyclase (GGDEF) domain-containing protein.	Predicted ATPase.	0.924
SDS90683.1	SDR95695.1	SAMN05444162_2572	SAMN05444162_0422	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.589
SDS90683.1	SDS99749.1	SAMN05444162_2572	SAMN05444162_2803	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.613
SDS90683.1	SDT16183.1	SAMN05444162_2572	SAMN05444162_3278	Diguanylate cyclase (GGDEF) domain-containing protein.	HD domain-containing protein.	0.761
SDS90683.1	SDT18689.1	SAMN05444162_2572	SAMN05444162_3354	Diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.615