STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT25652.1L-selenocysteine selenide-lyase (L-alanine-forming); Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (408 aa)    
Predicted Functional Partners:
SDT25688.1
Nitrogen fixation protein NifU.
 0.999
SDT25599.1
Fe-S cluster assembly ATP-binding protein.
 
 0.998
SDT25716.1
Fe-S cluster assembly protein SufB.
 0.997
SDT25625.1
Fe-S cluster assembly protein SufD.
 0.995
SDS69532.1
Thioredoxin reductase (NADPH).
  
 
  0.903
SDT54622.1
Thioredoxin reductase (NADPH).
   
 
  0.882
SDS81638.1
Cysteine desulfurase family protein.
  
  
 
0.874
SDT31518.1
Cysteine desulfurase.
    
0.864
SDT37122.1
Cysteine desulfurase.
    
0.864
SDS40154.1
Thioredoxin reductase.
   
 
  0.801
Your Current Organism:
Paenibacillaceae bacterium GAS479
NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479
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