STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT34042.1Methyltransferase domain-containing protein. (257 aa)    
Predicted Functional Partners:
tmcAL
Predicted nucleotidyltransferase; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
  
    0.726
SDS71656.1
Ubiquinone biosynthesis protein.
   
 0.618
SDR95077.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
 0.604
SDS10568.1
Dehydrogenase (flavoprotein).
   
 0.604
SDS14852.1
Von Willebrand factor type A domain-containing protein.
    
 0.578
SDS42437.1
D-amino-acid dehydrogenase/Ca-activated chloride channel family protein.
    
 0.578
SDS77958.1
Ca-activated chloride channel family protein.
    
 0.561
SDT33907.1
RNA-binding protein.
 
    0.540
SDS99875.1
Glycine/D-amino acid oxidase.
   
 0.529
SDT48291.1
Ubiquinone/menaquinone biosynthesis C-methylase UbiE.
  
 
  0.520
Your Current Organism:
Paenibacillaceae bacterium GAS479
NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479
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