STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT34395.1RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (215 aa)    
Predicted Functional Partners:
SDT34442.1
Hypothetical protein.
 
     0.904
SDT34420.1
Hypothetical protein.
       0.773
SDS49666.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.758
SDT48773.1
RNA polymerase sigma-70 factor, ECF subfamily; Non-canonical start codon; manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.747
SDS14418.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.736
SDT51105.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.732
SDT32236.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.707
SDS99917.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.699
SDT11888.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.681
SDS64859.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.673
Your Current Organism:
Paenibacillaceae bacterium GAS479
NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.