STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT44224.1Spore germination protein KA. (549 aa)    
Predicted Functional Partners:
SDT44253.1
Spore germination protein KC.
    0.947
SDT44272.1
Spore germination protein KB.
 
    0.934
SDT33667.1
Stage V sporulation protein AD.
  
  
 0.780
SDT33632.1
Stage V sporulation protein AC.
  
    0.777
SDR88177.1
Stage IV sporulation protein B.
  
     0.774
SDS78886.1
Sporulation protein YabP.
  
     0.774
SDS79144.1
AbrB family transcriptional regulator, stage V sporulation protein T.
  
     0.774
SDT33700.1
Stage V sporulation protein AE.
  
    0.774
gpr
GPR endopeptidase Aspartic peptidase. MEROPS family A25; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.774
SDT38890.1
RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.774
Your Current Organism:
Paenibacillaceae bacterium GAS479
NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479
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