STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT55835.1Spore coat protein E. (188 aa)    
Predicted Functional Partners:
SDT29672.1
Stage VI sporulation protein D.
  
 
 0.911
SDT18523.1
Spore germination protein Q.
  
  
 0.901
SDT18565.1
N-acetylmuramoyl-L-alanine amidase.
  
  
 0.810
SDS25696.1
Outer membrane lipoprotein-sorting protein.
  
     0.775
SDS53277.1
Spore germination protein D.
  
     0.775
SDT37494.1
Prespore-specific regulator.
  
     0.775
SDR93768.1
Protein YqhG of unknown function.
  
     0.774
SDS20674.1
Peptidase family M23.
  
     0.770
SDT03475.1
Putative amidase domain-containing protein.
  
    0.768
SDS78249.1
Stage II sporulation protein E.
  
     0.762
Your Current Organism:
Paenibacillaceae bacterium GAS479
NCBI taxonomy Id: 1882832
Other names: P. bacterium GAS479
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.