SDI87961.1 protein (Frankineae bacterium MT45)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDI87961.1

Histidine kinase. (576 aa)

Predicted Functional Partners:

SDI84342.1

0.951

SDI87973.1

0.934

SDI89324.1

0.910

SDI87936.1

0.877

SDI91349.1

0.800

SDJ46316.1

0.777

SDI82734.1

0.773

SDJ53575.1

0.726

SDJ03203.1

0.725

SDJ36820.1

0.690

Your Current Organism:

Frankineae bacterium MT45

NCBI taxonomy Id: 1882833
Other names: F. bacterium MT45

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDI82734.1	SDI84342.1	SAMN05444157_0347	SAMN05444157_0435	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.989
SDI82734.1	SDI87936.1	SAMN05444157_0347	SAMN05444157_0604	Diguanylate cyclase (GGDEF) domain-containing protein.	GAF domain-containing protein.	0.773
SDI82734.1	SDI87961.1	SAMN05444157_0347	SAMN05444157_0605	Diguanylate cyclase (GGDEF) domain-containing protein.	Histidine kinase.	0.773
SDI82734.1	SDI87973.1	SAMN05444157_0347	SAMN05444157_0606	Diguanylate cyclase (GGDEF) domain-containing protein.	Two component transcriptional regulator, LuxR family.	0.427
SDI82734.1	SDI89324.1	SAMN05444157_0347	SAMN05444157_0677	Diguanylate cyclase (GGDEF) domain-containing protein.	Methyl-accepting chemotaxis protein.	0.933
SDI82734.1	SDI91349.1	SAMN05444157_0347	SAMN05444157_0769	Diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.836
SDI82734.1	SDJ03203.1	SAMN05444157_0347	SAMN05444157_1374	Diguanylate cyclase (GGDEF) domain-containing protein.	Serine phosphatase RsbU, regulator of sigma subunit.	0.441
SDI82734.1	SDJ36820.1	SAMN05444157_0347	SAMN05444157_3032	Diguanylate cyclase (GGDEF) domain-containing protein.	Methyl-accepting chemotaxis sensory transducer with GAF sensor.	0.895
SDI82734.1	SDJ46316.1	SAMN05444157_0347	SAMN05444157_3485	Diguanylate cyclase (GGDEF) domain-containing protein.	Two component transcriptional regulator, LuxR family.	0.427
SDI82734.1	SDJ53575.1	SAMN05444157_0347	SAMN05444157_3850	Diguanylate cyclase (GGDEF) domain-containing protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.830
SDI84342.1	SDI82734.1	SAMN05444157_0435	SAMN05444157_0347	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.989
SDI84342.1	SDI87936.1	SAMN05444157_0435	SAMN05444157_0604	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	GAF domain-containing protein.	0.951
SDI84342.1	SDI87961.1	SAMN05444157_0435	SAMN05444157_0605	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Histidine kinase.	0.951
SDI84342.1	SDI87973.1	SAMN05444157_0435	SAMN05444157_0606	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Two component transcriptional regulator, LuxR family.	0.673
SDI84342.1	SDI89324.1	SAMN05444157_0435	SAMN05444157_0677	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Methyl-accepting chemotaxis protein.	0.988
SDI84342.1	SDI91349.1	SAMN05444157_0435	SAMN05444157_0769	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.957
SDI84342.1	SDJ03203.1	SAMN05444157_0435	SAMN05444157_1374	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Serine phosphatase RsbU, regulator of sigma subunit.	0.913
SDI84342.1	SDJ36820.1	SAMN05444157_0435	SAMN05444157_3032	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Methyl-accepting chemotaxis sensory transducer with GAF sensor.	0.975
SDI84342.1	SDJ46316.1	SAMN05444157_0435	SAMN05444157_3485	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Two component transcriptional regulator, LuxR family.	0.673
SDI84342.1	SDJ53575.1	SAMN05444157_0435	SAMN05444157_3850	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.	0.989