SDI97567.1 protein (Frankineae bacterium MT45)

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Score

SDI97567.1

ATPase components of ABC transporters with duplicated ATPase domains. (539 aa)

Predicted Functional Partners:

rplO

0.834

rplD

0.824

rplU

0.822

rpsO

0.821

rpsC

0.820

rplM

0.819

rplR

0.814

rplC

0.814

rpmF

0.812

rpmD

0.812

Your Current Organism:

Frankineae bacterium MT45

NCBI taxonomy Id: 1882833
Other names: F. bacterium MT45

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDI97567.1	rplC	SAMN05444157_1087	SAMN05444157_3324	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.814
SDI97567.1	rplD	SAMN05444157_1087	SAMN05444157_3323	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.824
SDI97567.1	rplM	SAMN05444157_1087	SAMN05444157_1089	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.819
SDI97567.1	rplO	SAMN05444157_1087	SAMN05444157_3305	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.834
SDI97567.1	rplR	SAMN05444157_1087	SAMN05444157_3308	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.814
SDI97567.1	rplU	SAMN05444157_1087	SAMN05444157_1526	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.822
SDI97567.1	rpmD	SAMN05444157_1087	SAMN05444157_3306	ATPase components of ABC transporters with duplicated ATPase domains.	LSU ribosomal protein L30P.	0.812
SDI97567.1	rpmF	SAMN05444157_1087	SAMN05444157_2595	ATPase components of ABC transporters with duplicated ATPase domains.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.812
SDI97567.1	rpsC	SAMN05444157_1087	SAMN05444157_3318	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.820
SDI97567.1	rpsO	SAMN05444157_1087	SAMN05444157_2123	ATPase components of ABC transporters with duplicated ATPase domains.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.821
rplC	SDI97567.1	SAMN05444157_3324	SAMN05444157_1087	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ATPase components of ABC transporters with duplicated ATPase domains.	0.814
rplC	rplD	SAMN05444157_3324	SAMN05444157_3323	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	SAMN05444157_3324	SAMN05444157_1089	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplO	SAMN05444157_3324	SAMN05444157_3305	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplC	rplR	SAMN05444157_3324	SAMN05444157_3308	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplU	SAMN05444157_3324	SAMN05444157_1526	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplC	rpmD	SAMN05444157_3324	SAMN05444157_3306	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	LSU ribosomal protein L30P.	0.999
rplC	rpmF	SAMN05444157_3324	SAMN05444157_2595	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Large subunit ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.978
rplC	rpsC	SAMN05444157_3324	SAMN05444157_3318	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsO	SAMN05444157_3324	SAMN05444157_2123	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.998