STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ09741.1Diguanylate cyclase (GGDEF) domain-containing protein. (618 aa)    
Predicted Functional Partners:
SDI84342.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.985
SDJ31535.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
0.950
SDI89324.1
Methyl-accepting chemotaxis protein.
  
 0.949
SDJ42093.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.945
SDI80458.1
PAS domain S-box-containing protein.
 
 0.931
SDI91349.1
PAS domain S-box-containing protein.
 
 0.852
SDJ36820.1
Methyl-accepting chemotaxis sensory transducer with GAF sensor.
  
 0.784
SDJ53575.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
 0.771
SDI96164.1
Diguanylate cyclase with GAF sensor.
 
0.764
SDJ53549.1
Thioredoxin reductase (NADPH).
  
 0.739
Your Current Organism:
Frankineae bacterium MT45
NCBI taxonomy Id: 1882833
Other names: F. bacterium MT45
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