SDJ19686.1 protein (Frankineae bacterium MT45)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDJ19686.1

Protein of unknown function. (210 aa)

Predicted Functional Partners:

SDJ19670.1

0.945

SDJ19769.1

0.810

SDJ19710.1

0.773

SDJ19384.1

0.758

SDJ12120.1

0.742

SDJ12820.1

0.739

rbpA

0.737

SDJ23741.1

0.717

whiA

0.693

SDJ52308.1

0.668

Your Current Organism:

Frankineae bacterium MT45

NCBI taxonomy Id: 1882833
Other names: F. bacterium MT45

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDJ12120.1	SDJ12820.1	SAMN05444157_1846	SAMN05444157_1885	Protein of unknown function.	Protein of unknown function.	0.479
SDJ12120.1	SDJ19384.1	SAMN05444157_1846	SAMN05444157_2202	Protein of unknown function.	Protein of unknown function.	0.753
SDJ12120.1	SDJ19686.1	SAMN05444157_1846	SAMN05444157_2217	Protein of unknown function.	Protein of unknown function.	0.742
SDJ12120.1	SDJ19769.1	SAMN05444157_1846	SAMN05444157_2221	Protein of unknown function.	Chlorite dismutase.	0.450
SDJ12120.1	SDJ23741.1	SAMN05444157_1846	SAMN05444157_2404	Protein of unknown function.	MerR HTH family regulatory protein.	0.590
SDJ12120.1	SDJ52308.1	SAMN05444157_1846	SAMN05444157_3784	Protein of unknown function.	Predicted phosphohydrolase, MPP superfamily.	0.555
SDJ12120.1	rbpA	SAMN05444157_1846	SAMN05444157_2346	Protein of unknown function.	RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.703
SDJ12120.1	whiA	SAMN05444157_1846	SAMN05444157_2260	Protein of unknown function.	Hypothetical protein; Involved in cell division and chromosome segregation.	0.505
SDJ12820.1	SDJ12120.1	SAMN05444157_1885	SAMN05444157_1846	Protein of unknown function.	Protein of unknown function.	0.479
SDJ12820.1	SDJ19384.1	SAMN05444157_1885	SAMN05444157_2202	Protein of unknown function.	Protein of unknown function.	0.763
SDJ12820.1	SDJ19686.1	SAMN05444157_1885	SAMN05444157_2217	Protein of unknown function.	Protein of unknown function.	0.739
SDJ12820.1	SDJ23741.1	SAMN05444157_1885	SAMN05444157_2404	Protein of unknown function.	MerR HTH family regulatory protein.	0.763
SDJ12820.1	SDJ52308.1	SAMN05444157_1885	SAMN05444157_3784	Protein of unknown function.	Predicted phosphohydrolase, MPP superfamily.	0.574
SDJ12820.1	rbpA	SAMN05444157_1885	SAMN05444157_2346	Protein of unknown function.	RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.763
SDJ12820.1	whiA	SAMN05444157_1885	SAMN05444157_2260	Protein of unknown function.	Hypothetical protein; Involved in cell division and chromosome segregation.	0.644
SDJ19384.1	SDJ12120.1	SAMN05444157_2202	SAMN05444157_1846	Protein of unknown function.	Protein of unknown function.	0.753
SDJ19384.1	SDJ12820.1	SAMN05444157_2202	SAMN05444157_1885	Protein of unknown function.	Protein of unknown function.	0.763
SDJ19384.1	SDJ19670.1	SAMN05444157_2202	SAMN05444157_2216	Protein of unknown function.	Ribonuclease D.	0.584
SDJ19384.1	SDJ19686.1	SAMN05444157_2202	SAMN05444157_2217	Protein of unknown function.	Protein of unknown function.	0.758
SDJ19384.1	SDJ19769.1	SAMN05444157_2202	SAMN05444157_2221	Protein of unknown function.	Chlorite dismutase.	0.546