STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ20972.1Iron-regulated ABC transporter membrane component SufB. (476 aa)    
Predicted Functional Partners:
SDJ21023.1
Fe-S cluster assembly ATP-binding protein.
 0.999
SDJ21046.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 0.994
SDJ21064.1
Nitrogen fixation protein NifU.
 
 
 0.968
SDJ20949.1
Predicted transcriptional regulator, ArsR family.
  
    0.960
SDJ04130.1
Selenocysteine lyase/Cysteine desulfurase.
 0.917
SDI85998.1
Cysteine desulfurase family protein, VC1184 subfamily.
 0.890
SDJ21091.1
Metal-sulfur cluster biosynthetic enzyme.
 
   
 0.859
SDJ20987.1
Fe-S cluster assembly protein SufD.
 
   
0.857
SDJ04363.1
Selenocysteine lyase/Cysteine desulfurase.
  
 0.705
SDJ21013.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit.
       0.702
Your Current Organism:
Frankineae bacterium MT45
NCBI taxonomy Id: 1882833
Other names: F. bacterium MT45
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