STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ32801.1Pimeloyl-ACP methyl ester carboxylesterase. (355 aa)    
Predicted Functional Partners:
SDI77132.1
Phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase D.
  
 0.950
ku
DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
       0.773
SDJ21725.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.576
SDJ44683.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 
  0.561
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
   
  0.543
SDJ32778.1
Ribosome assembly protein YihI, activator of Der GTPase.
       0.541
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
   
  0.529
SDJ32591.1
Predicted Zn-dependent peptidase.
 
     0.525
SDJ32839.1
Bifunctional non-homologous end joining protein LigD; Manually curated.
       0.519
SDJ32872.1
Bifunctional non-homologous end joining protein LigD.
       0.519
Your Current Organism:
Frankineae bacterium MT45
NCBI taxonomy Id: 1882833
Other names: F. bacterium MT45
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