SDJ37205.1 protein (Frankineae bacterium MT45)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDJ37205.1

ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC. (294 aa)

Predicted Functional Partners:

SDJ37227.1

0.997

SDJ37248.1

0.995

SDJ37166.1

0.994

SDJ37188.1

0.992

SDJ37270.1

0.847

SDJ37667.1

0.817

SDJ37293.1

0.683

SDJ09546.1

0.620

SDJ29907.1

0.620

SDJ41583.1

0.620

Your Current Organism:

Frankineae bacterium MT45

NCBI taxonomy Id: 1882833
Other names: F. bacterium MT45

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDJ09546.1	SDJ37166.1	SAMN05444157_1710	SAMN05444157_3048	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	0.636
SDJ09546.1	SDJ37188.1	SAMN05444157_1710	SAMN05444157_3049	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	0.679
SDJ09546.1	SDJ37205.1	SAMN05444157_1710	SAMN05444157_3050	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	0.620
SDJ09546.1	SDJ37227.1	SAMN05444157_1710	SAMN05444157_3051	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.	0.669
SDJ09546.1	SDJ37248.1	SAMN05444157_1710	SAMN05444157_3052	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.	0.680
SDJ09546.1	SDJ37667.1	SAMN05444157_1710	SAMN05444157_3071	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase.	Ferredoxin-NADP reductase.	0.606
SDJ29907.1	SDJ37166.1	SAMN05444157_2710	SAMN05444157_3048	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	0.636
SDJ29907.1	SDJ37188.1	SAMN05444157_2710	SAMN05444157_3049	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	0.627
SDJ29907.1	SDJ37205.1	SAMN05444157_2710	SAMN05444157_3050	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	0.620
SDJ29907.1	SDJ37227.1	SAMN05444157_2710	SAMN05444157_3051	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.	0.626
SDJ29907.1	SDJ37248.1	SAMN05444157_2710	SAMN05444157_3052	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.	0.620
SDJ29907.1	SDJ37270.1	SAMN05444157_2710	SAMN05444157_3053	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.420
SDJ29907.1	SDJ37667.1	SAMN05444157_2710	SAMN05444157_3071	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	Ferredoxin-NADP reductase.	0.606
SDJ37166.1	SDJ09546.1	SAMN05444157_3048	SAMN05444157_1710	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Short chain enoyl-CoA hydratase /Enoyl-CoA hydratase.	0.636
SDJ37166.1	SDJ29907.1	SAMN05444157_3048	SAMN05444157_2710	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.636
SDJ37166.1	SDJ37188.1	SAMN05444157_3048	SAMN05444157_3049	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	0.997
SDJ37166.1	SDJ37205.1	SAMN05444157_3048	SAMN05444157_3050	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	0.994
SDJ37166.1	SDJ37227.1	SAMN05444157_3048	SAMN05444157_3051	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.	0.998
SDJ37166.1	SDJ37248.1	SAMN05444157_3048	SAMN05444157_3052	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.	0.993
SDJ37166.1	SDJ37270.1	SAMN05444157_3048	SAMN05444157_3053	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.825