STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ53331.1Beta-glucosidase. (766 aa)    
Predicted Functional Partners:
SDI78035.1
Glycosyl hydrolases family 16.
  
 0.775
SDI83496.1
N-acetylmuramoyl-L-alanine amidase.
     
 0.621
SDJ26883.1
Hypothetical protein.
    
 0.524
SDI82138.1
Cell wall-associated hydrolase, NlpC family.
    
 0.516
SDJ29504.1
Trehalose synthase.
   
 
  0.512
SDI78160.1
Glycosyl hydrolases family 16.
 
  
  0.511
SDJ53351.1
Uncharacterized conserved protein.
       0.509
SDI76201.1
beta-N-acetylhexosaminidase.
  
     0.498
SDI78058.1
Beta-glucanase, GH16 family.
 
  
  0.482
SDJ53375.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
       0.479
Your Current Organism:
Frankineae bacterium MT45
NCBI taxonomy Id: 1882833
Other names: F. bacterium MT45
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.