STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GHITMGrowth hormone-inducible transmembrane protein; Belongs to the BI1 family. (345 aa)    
Predicted Functional Partners:
Z169_03333
Schwannomin-interacting protein 1.
 
      0.890
CDHR1
Cadherin-related family member 1.
 
    
 0.618
VAMP7
Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.
      
 0.570
Z169_13100
Protein lifeguard 2; Belongs to the BI1 family.
   
  
 0.527
CLRN3
Clarin-3.
      
 0.514
MRE11A
Double-strand break repair protein MRE11; Belongs to the MRE11/RAD32 family.
      
 0.514
LY96
Lymphocyte antigen 96.
      
 0.512
RPSA
40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family.
      
 0.505
ITM2C
Integral membrane protein 2C.
      
 0.504
TSPAN18
Tetraspanin.
      
 0.495
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.