STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRMT12tRNA wybutosine-synthesizing protein 2. (355 aa)    
Predicted Functional Partners:
TYW5
tRNA wybutosine-synthesizing protein 5.
 
    
 0.798
Z169_00534
tRNA wybutosine-synthesizing protein 1.
  
 
 0.784
TYW3
tRNA wybutosine-synthesizing protein 3.
  
 
 0.752
LCMT2
Leucine carboxyl methyltransferase 2.
   
  
 0.733
TRMT5
tRNA (Guanine(37)-N1)-methyltransferase.
      
0.665
TSR3
Ribosome biogenesis protein TSR3.
   
  
 0.629
TRMT2B
tRNA (Uracil(54)-C(5))-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
   
  
 0.601
WBSCR22
Putative methyltransferase WBSCR22.
   
  
 0.522
WDR4
tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.
   
  
 0.514
LCMT1
Leucine carboxyl methyltransferase 1.
   
  
 0.500
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.