STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDAC3Histone deacetylase 3. (382 aa)    
Predicted Functional Partners:
ARID4A
AT-rich interactive domain-containing protein 4A.
   
 0.989
Z169_06690
RNA polymerase-associated protein LEO1.
   
 0.912
NCOR1
Nuclear receptor corepressor 1.
    
 0.891
Z169_10759
Nuclear receptor corepressor 2.
    
 0.891
SIN3B
Paired amphipathic helix protein Sin3b.
   
 0.867
BRMS1L
Breast cancer metastasis-suppressor 1-like.
   
 0.846
TBL1XR1
F-box-like/WD repeat-containing protein TBL1XR1.
   
 0.832
TBL1X
F-box-like/WD repeat-containing protein TBL1X.
   
 0.832
MTA3
Metastasis-associated protein MTA3.
    
 0.822
KDM1A
Lysine-specific histone demethylase 1A.
   
 0.813
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.