STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDK9Cyclin-dependent kinase 9. (343 aa)    
Predicted Functional Partners:
CCNT1
Cyclin-T1; Belongs to the cyclin family.
   
 0.996
AFF4
AF4/FMR2 family member 4.
    
 0.983
CCNT2
Cyclin-T2; Belongs to the cyclin family.
   
 0.972
CCNK
Cyclin-K; Belongs to the cyclin family.
   
 0.952
ELL
RNA polymerase II elongation factor ELL.
    
 0.899
LARP7
La-related protein 7.
   
 0.897
MED1
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 
 0.896
MLLT3
Protein AF-9.
    
 0.896
MED12L
Mediator of RNA polymerase II transcription subunit 12-like.
    
 
 0.848
SUPT4H1
Transcription elongation factor SPT4.
     
 0.844
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.