ROMO1 protein (Egretta garzetta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ROMO1

Reactive oxygen species modulator 1. (79 aa)

Predicted Functional Partners:

TIMM17A

0.748

TIMM21

0.733

Z169_09084

0.717

TIMM23

0.659

TIMM44

0.624

TIMM10

0.589

TIMM9

0.578

Z169_15310

0.578

HIGD1A

0.567

NDUFB8

0.557

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HIGD1A	ROMO1	A0A091J3V0	A0A091IP88	HIG1 domain-containing protein.	Reactive oxygen species modulator 1.	0.567
NDUFB8	ROMO1	A0A091JC65	A0A091IP88	Uncharacterized protein.	Reactive oxygen species modulator 1.	0.557
NDUFB8	TIMM17A	A0A091JC65	A0A091ITM0	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit Tim17-A.	0.809
NDUFB8	TIMM21	A0A091JC65	A0A091JAX1	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit Tim21.	0.628
ROMO1	HIGD1A	A0A091IP88	A0A091J3V0	Reactive oxygen species modulator 1.	HIG1 domain-containing protein.	0.567
ROMO1	NDUFB8	A0A091IP88	A0A091JC65	Reactive oxygen species modulator 1.	Uncharacterized protein.	0.557
ROMO1	TIMM10	A0A091IP88	A0A091J0N8	Reactive oxygen species modulator 1.	Mitochondrial import inner membrane translocase subunit Tim10.	0.589
ROMO1	TIMM17A	A0A091IP88	A0A091ITM0	Reactive oxygen species modulator 1.	Mitochondrial import inner membrane translocase subunit Tim17-A.	0.748
ROMO1	TIMM21	A0A091IP88	A0A091JAX1	Reactive oxygen species modulator 1.	Mitochondrial import inner membrane translocase subunit Tim21.	0.733
ROMO1	TIMM23	A0A091IP88	A0A091IKH9	Reactive oxygen species modulator 1.	Putative mitochondrial import inner membrane translocase subunit Tim23B.	0.659
ROMO1	TIMM44	A0A091IP88	A0A091J0R7	Reactive oxygen species modulator 1.	Mitochondrial import inner membrane translocase subunit TIM44.	0.624
ROMO1	TIMM9	A0A091IP88	A0A091J8L2	Reactive oxygen species modulator 1.	Mitochondrial import inner membrane translocase subunit Tim9.	0.578
ROMO1	Z169_09084	A0A091IP88	A0A091IX73	Reactive oxygen species modulator 1.	Mitochondrial import inner membrane translocase subunit tim16-A.	0.717
ROMO1	Z169_15310	A0A091IP88	A0A091JN12	Reactive oxygen species modulator 1.	Sterile alpha motif domain-containing protein 15.	0.578
TIMM10	ROMO1	A0A091J0N8	A0A091IP88	Mitochondrial import inner membrane translocase subunit Tim10.	Reactive oxygen species modulator 1.	0.589
TIMM10	TIMM17A	A0A091J0N8	A0A091ITM0	Mitochondrial import inner membrane translocase subunit Tim10.	Mitochondrial import inner membrane translocase subunit Tim17-A.	0.899
TIMM10	TIMM21	A0A091J0N8	A0A091JAX1	Mitochondrial import inner membrane translocase subunit Tim10.	Mitochondrial import inner membrane translocase subunit Tim21.	0.725
TIMM10	TIMM23	A0A091J0N8	A0A091IKH9	Mitochondrial import inner membrane translocase subunit Tim10.	Putative mitochondrial import inner membrane translocase subunit Tim23B.	0.882
TIMM10	TIMM44	A0A091J0N8	A0A091J0R7	Mitochondrial import inner membrane translocase subunit Tim10.	Mitochondrial import inner membrane translocase subunit TIM44.	0.740
TIMM10	TIMM9	A0A091J0N8	A0A091J8L2	Mitochondrial import inner membrane translocase subunit Tim10.	Mitochondrial import inner membrane translocase subunit Tim9.	0.999