Z169_14081 protein (Egretta garzetta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Z169_14081

Ras-related protein Rab-44. (173 aa)

Predicted Functional Partners:

CRACR2B

0.899

GDI2

0.586

RAB3IL1

0.519

RAB3IP

0.519

Z169_12842

0.509

Z169_15459

0.503

CHM

0.501

RABGGTB

0.498

Z169_08256

0.465

EXOC2

0.464

Your Current Organism:

Egretta garzetta

NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHM	GDI2	A0A091INA4	A0A091IPU9	Rab proteins geranylgeranyltransferase component A 2.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.650
CHM	RAB3IL1	A0A091INA4	A0A091JDN0	Rab proteins geranylgeranyltransferase component A 2.	Guanine nucleotide exchange factor for Rab-3A.	0.412
CHM	RAB3IP	A0A091INA4	A0A091JQ35	Rab proteins geranylgeranyltransferase component A 2.	Rab-3A-interacting protein.	0.411
CHM	RABGGTB	A0A091INA4	A0A091IZF2	Rab proteins geranylgeranyltransferase component A 2.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.950
CHM	Z169_14081	A0A091INA4	A0A091IQ31	Rab proteins geranylgeranyltransferase component A 2.	Ras-related protein Rab-44.	0.501
CHM	Z169_15459	A0A091INA4	A0A091JCU1	Rab proteins geranylgeranyltransferase component A 2.	EF-hand calcium-binding domain-containing protein 4B.	0.501
CRACR2B	Z169_14081	A0A091JCP7	A0A091IQ31	EF-hand calcium-binding domain-containing protein 4A.	Ras-related protein Rab-44.	0.899
EXOC2	RAB3IL1	A0A091IZ80	A0A091JDN0	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Guanine nucleotide exchange factor for Rab-3A.	0.695
EXOC2	RAB3IP	A0A091IZ80	A0A091JQ35	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Rab-3A-interacting protein.	0.695
EXOC2	Z169_08256	A0A091IZ80	A0A091J382	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.998
EXOC2	Z169_12842	A0A091IZ80	A0A091JFI5	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Exocyst complex component 6.	0.995
EXOC2	Z169_14081	A0A091IZ80	A0A091IQ31	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Ras-related protein Rab-44.	0.464
EXOC2	Z169_15459	A0A091IZ80	A0A091JCU1	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	EF-hand calcium-binding domain-containing protein 4B.	0.464
GDI2	CHM	A0A091IPU9	A0A091INA4	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab proteins geranylgeranyltransferase component A 2.	0.650
GDI2	RAB3IL1	A0A091IPU9	A0A091JDN0	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Guanine nucleotide exchange factor for Rab-3A.	0.635
GDI2	RAB3IP	A0A091IPU9	A0A091JQ35	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab-3A-interacting protein.	0.635
GDI2	RABGGTB	A0A091IPU9	A0A091IZF2	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.783
GDI2	Z169_14081	A0A091IPU9	A0A091IQ31	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ras-related protein Rab-44.	0.586
GDI2	Z169_15459	A0A091IPU9	A0A091JCU1	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	EF-hand calcium-binding domain-containing protein 4B.	0.586
RAB3IL1	CHM	A0A091JDN0	A0A091INA4	Guanine nucleotide exchange factor for Rab-3A.	Rab proteins geranylgeranyltransferase component A 2.	0.412