STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTN1Reticulon. (758 aa)    
Predicted Functional Partners:
SEC63
Translocation protein SEC63.
    
 
 0.715
GCH1
GTP cyclohydrolase 1.
    
   0.564
VTA1
Vacuolar protein sorting-associated protein VTA1.
    
   0.564
OMG
Oligodendrocyte-myelin glycoprotein.
    
 0.533
KIAA1715
Protein lunapark.
    
 
 0.527
REEP5
Receptor expression-enhancing protein.
    
 
 0.518
TMEM33
Transmembrane protein 33.
   
 
 0.518
REEP6
Receptor expression-enhancing protein.
    
 
 0.494
NGFR
Tumor necrosis factor receptor superfamily member 16.
     
 0.487
LRFN5
Leucine-rich repeat and fibronectin type-III domain-containing protein 5.
    
 0.466
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.