STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Z169_02038GON-4-like. (2054 aa)    
Predicted Functional Partners:
Z169_06397
Fanconi anemia group M protein.
    
 0.660
UBXN7
UBX domain-containing protein 7.
   
 
 0.533
Z169_06263
Survival motor neuron protein.
    
 0.531
ASPHD2
Aspartate beta-hydroxylase domain-containing protein 2.
      
 0.512
LSM11
U7 snRNA-associated Sm-like LSm11.
      
 0.505
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.490
CRAMP1L
Protein cramped-like.
   
 
 0.484
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.472
SNRPF
Small nuclear ribonucleoprotein F.
    
  0.457
Z169_15199
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
     
 0.448
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.