STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC8Zinc finger CCHC domain-containing protein 8. (647 aa)    
Predicted Functional Partners:
SKIV2L2
Superkiller viralicidic activity 2-like 2.
    
 
 0.950
EXOSC3
Exosome complex component RRP40.
   
 
 0.680
Z169_09801
Exosome complex component RRP43.
    
 
 0.610
EXOSC7
Exosome complex component RRP42.
   
 
 0.597
SF3B4
Splicing factor 3B subunit 4.
      
 0.544
NRDE2
Protein NRDE2.
   
  
 0.527
WDR33
Pre-mRNA 3' end processing protein WDR33.
   
  
 0.525
EXOSC1
Exosome complex component CSL4.
    
 
 0.517
ZFC3H1
Zinc finger C3H1 domain-containing protein.
      
 0.515
PHAX
Phosphorylated adapter RNA export protein.
      
 0.495
Your Current Organism:
Egretta garzetta
NCBI taxonomy Id: 188379
Other names: E. garzetta, little egret
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.